@article{omta_et_al_2009,
author = {Anne Willem Omta and Jorn Bruggeman and S. A. L. M. Kooijman and
Henk Dijkstra},
title = {The organic carbon pump in the {A}tlantic},
journal = {Journal of Sea Research},
volume = {62},
issue = {2-3},
year = {2009},
pages = {179--187},
doi = {doi:10.1016/j.seares.2009.06.005}
}
@article{jenkinson_et_sun_2011,
author = {Jenkinson, I R and Sun, Jun},
title = {A model of pycnocline thickness modified by the rheological
properties of phytoplankton exopolymeric substances},
journal = {Journal of Plankton Research},
year = {2011},
volume = {33},
pages = {373-383},
doi = {doi:10.1093/plankt/fbq099}
}
@article{somavilla_et_al_2011,
author = {Somavilla Cabrillo, Raquel and Gonzalez-Pola, Cesar and
Ruiz-Villarreal, Manuel and Lavin Montero, Alicia},
title = {Mixed layer depth ({MLD}) variability in the southern {B}ay
of {B}iscay. {D}eepening of winter {MLD}s concurrent with
generalized upper water warming trends?},
journal = {Ocean Dynamics},
year = {2011},
volume = {61},
number = {9},
pages = {1215-1235},
publisher = {SPRINGER HEIDELBERG},
type = {Article},
doi = {doi:10.1007/s10236-011-0407-6}
}
@article{sonntag_et_hense_2011,
author = {S. Sonntag and Inga Hense},
title = {Phytoplankton behavior affects ocean mixed layer dynamics
through biological-physical feedback mechanisms},
journal = {Geophysical Research Letters},
volume = {38},
number = {L15610},
doi = {doi:10.1029/2011GL048205},
year = {2011}
}
@article{jenkinson_et_sun_2010,
author = {Jenkinson, Ian R and Sun, Jun},
title = {Rheological properties of natural waters with regard to plankton
thin layers. {A} short review},
journal = {Journal of Marine Systems},
year = {2010},
volume = {83},
pages = {287-297},
doi = {doi:10.1016/j.jmarsys.2010.04.004}
}
@article{miladinova_et_stips_2010,
author = {Miladinova, S. and Stips, A.},
title = {Sensitivity of oxygen dynamics in the water column of the Baltic
Sea to external forcing},
journal = {Ocean Science},
volume = {6},
year = {2010},
number = {2},
pages = {461--474},
url = {http://www.ocean-sci.net/6/461/2010/},
issn = {1812-0784}
}
@article{vanderdermoelenetal_2009,
author = {Johan van der Molen and Karsten Bolding and Naomi Greenword and
David Kevin Mills},
title = {A 1-D vertical multiple grain size model of suspended particulate
matter in combined currents and waves in shelf seas},
journal = {Journal of Geophysical Research},
year = {2009},
volume = {114},
pages = {F01030},
doi = {doi:10.1029/2008JF001150}
}
@article{yeetal_2009,
author = {Ye, Y. and Volker, C. and Wolf-Gladrow, D. A.},
title = {A model of {F}e speciation and biogeochemistry at the {T}ropical
{E}astern {N}orth {A}tlantic {T}ime-{S}eries {O}bservatory site},
journal = {Biogeosciences},
volume = {6},
year = {2009},
number = {10},
pages = {2041--2061},
url = {http://www.biogeosciences.net/6/2041/2009/},
issn = {1726-4170}
}
@article{kuznetzovetal_2008,
author = {Ivan Kuznetzov and Thomas Neumann and Hans Burchard},
title = {Model study on the ecosystem impact of a variable {C:N:P}
ratio for cyanobacteria in the {B}altic {P}roper},
journal = {Ecological Modelling},
volume = {219},
pages = {107--114},
year = {2008},
doi = {doi:10.1016/j.ecolmodel.2008.08.002}
}
@article{burchard_hofmeister_2008,
author = {Hans Burchard and Richard Hofmeister},
title = {A dynamic equation for the potential energy anomaly for analysing
mixing and stratification in estuaries and coastal seas},
journal = {Estuarine, Coastal and Shelf Science},
volume = {77},
pages = {679--687},
year = {2008},
doi = {doi:10.1016/j.ecss.2007.10.025}
}
@article{burchardetal_2008,
author = {Hans Burchard and G\"otz Fl\"oser and Joanna V. Staneva and
Rolf Riethm\"uller and Thomas Badewien},
title = {Impact of density gradients on net sediment transport
into the {W}adden {S}ea},
journal = {Journal of Physical Oceanography},
volume = {38},
pages = {566--587},
year = {2008},
doi = {doi:10.1175/2007JPO3796.1}
}
@article{burchard_2009,
author = {Hans Burchard},
title = {Combined effects of wind, tide
and horizontal density gradients
on stratification in estuaries and coastal seas},
journal = {Journal of Physical Oceanography},
volume = {39},
pages = {2117--2136},
year = {2009},
doi = {doi:10.1175/2009JPO4142.1}
}
@article{verspechtetal_2009,
author = {Florence I. Verspecht and Hans Burchard and Tom P. Rippeth and
M. John Howarth and and John H. Simpson},
title = {Processes impacting on stratification in a region of
freshwater influence: {A}pplication to {L}iverpool {B}ay},
journal = {Journal of Geophysical Research},
volume = {114},
pages = {11022},
doi = {doi:10.1029/2009JC005475},
year = {2009},
note = {}
}
@article{hense_quack_2009,
author = {Inga Hense and Birgit Quack},
title = {Modelling the vertical distribution of bromoform in the
upper water column of the tropical {A}tlantic {O}cean},
journal = {Biogeosciences},
volume = {6},
pages = {535--544},
year = {2009}
}
@article{hense_burchard_2010,
author = {Inga Hense and Hans Burchard},
title = {Modelling cyanobacteria in shallow coastal seas},
journal = {Ecological Modelling},
volume = {221},
pages = {238--244},
year = {2010},
doi = {doi:10.1016/j.ecolmodel.2009.09.006}
}
@article{conleyetal_2008,
author = {D.C. Conley and S. Falchetti and I.P. Lohmann and M. Brocchini},
title = {The effects of flow stratification by non-cohesive sediment
on transport in high-energy wave-driven flows},
journal = {Journal of Fluid Mechanics},
year = {2008},
volume = {610},
pages = {43--67},
doi = {doi:10.1017/S0022112008002565}
}
@article{falchettietal_2010,
author = {S. Falchetti and D.C. Conley and M. Brocchini and S. Elgar},
title = {Nearshore bar migration and sediment induced buoyancy effects},
journal = {Continental Shelf Research},
year = {2010},
volume = {30},
pages = {226--238},
doi = {doi:10.1016/j.csr.2009.11.005}
}
@article{jones_monismith_2008a,
author = {Nicole L. Jones and Stephen G. Monismith},
title = {The Influence of Whitecapping Waves on the Vertical Structure
of Turbulence in a Shallow Estuarine Embayment},
journal = {Journal of Physical Oceanography},
year = {2008},
volume = {38},
pages = {1563--1580}
}
@article{jones_monismith_2008b,
author = {Nicole L. Jones and Stephen G. Monismith},
title = {Modeling the influence of wave-enhanced turbulence
in a shallow tide- and wind-driven water column},
journal = {Journal of Geophysical Research},
year = {2008},
volume = {113},
pages = {C03009},
doi = {doi:10.1029/2007JC004246}
}
@article{carnieletal_2007,
author = {Sandro Carniel and Marcello Vichi and Mauro Sclavo},
title = {Sensitivity of a coupled physical-biological model to turbulence:
high frequency simulations in a northern {A}diratic station.},
journal = {Chemistry and Ecology},
year = {2007},
volume = {23(2)},
pages = {157--175}
}
@article{bruggemannkooijman_2007,
author = {J. Bruggeman and S. A. L. M. Kooijman},
title = {A biodiversity-inspired approach to aquatic ecosystem modeling.},
journal = {Limnology and Oceanography},
year = {2007},
volume = {52(4)},
pages = {1533--1544},
doi = {doi:10.4319/lo.2007.52.4.1533}
}
@article{maaretall_2007,
author = {Marie Maar and Torkel Gissel Nielsen and Karsten Bolding and
Hans Burchard and Andre W. Visser},
title = {Grazing effects of blue mussel Mytilus edulis on the pelagic
food web under different turbulence conditions},
journal = {Marine Ecology Progress Series},
year = {2007},
volume = {339},
pages = {199--213}
}
@article{steineretal_2006,
author = {Nadja Steiner and Ken Denman and Norm McFarlane and
Larry Solheim},
title = {Simulating the Atmosphere-Ocean Physical Conditions and
Effects on the Planktonic Ecosystem Response During {SERIES}},
journal = {Deep Sea Research II},
year = {2006},
volume = {53},
pages = {2434-2454},
doi = {doi:10.1016/j.dsr2.2006.05.030}
}
@article{ralstonstacey_2004,
author = {D. K. Ralston and M. T. Stacey},
title = {Shear and turbulence production across subtidal channels},
journal = {Journal of Marine Systems},
year = {2006},
volume = {64},
pages = {147--171}
}
@article{torresetal_2006,
author = {R. Torres and J. I. Allen and F. G. Figueiras},
title = {Sequential data assimilation in an upwelling influenced estuary},
journal = {Journal of Marine Systems},
volume = {60},
year = {2006},
pages = {317--329}
}
@article{allenetal_2006,
author = {J.I. Allen and S. D. Archer and J. C. Blackford and F. J.
Gilbert and A. H. Taylor},
title = {Changes in DMS production and flux in relation to decadal shifts
in ocean circulation},
journal = {Tellus B},
year = {2006},
volume = {58},
pages = {242--254}
}
@article{allenetal_2004,
author = {J.I. Allen and J. D. Siddorn and J. C. Blackford and F. J.
Gilbert},
title = {Turbulence as a control on the microbial loop in a temperate
seasonally stratified marine systems model},
journal = {Journal of Sea Research},
year = {2004},
volume = {52},
pages = {1--20}
}
@article{archeretal_2004,
author = {S. D. Archer and F. J. Gilbert and J.I. Allen and
J. C. Blackford and P. D. Nightingale},
title = {Modelling of the seasonal patterns of dimethyl sulphide production
and fate during 1989 at a site in the {N}orth {S}ea},
journal = {Canadian Journal of Fisheries Research},
year = {2004},
volume = {61},
pages = {765--787}
}
@article{blackfordetal_2004,
author = {J. C. Blackford and J.I. Allen and F. J. Gilbert J.I. Allen},
title = {Ecosystem dynamics at six contrasting sites: a generic
modelling study},
journal = {Journal of Marine Systems},
year = {2004},
volume = {52},
pages = {191--215}
}
@article{burchardetal_2005,
author = {Hans Burchard and H.U. Lass and V. Mohrholz and L. Umlauf
and J. Sellschopp and V. Fiekas and K. Bolding and
L. Arneborg},
title = {Dynamics of medium-intensity dense water plumes in the
{A}rkona {S}ea, {W}estern {B}altic {S}ea},
journal = {Ocean Dynamics},
volume = {55},
pages = {391-402},
year = {2005},
doi = {doi:10.1007/s10236-005-0025-2}
}
@article{burchardetal_2006,
author = {Hans Burchard and Karsten Bolding and Wilfried K\"uhn and
Andreas Meister and Thomas Neumann and Lars Umlauf},
title = {Description of a flexible and extendable
physical-biogeochemical model system for the water column},
journal = {Journal of Marine Systems},
volume = {61},
pages = {180-211},
year = {2006},
doi = {doi:10.1016/j.jmarsys.2005.04.011}
}
@article{stipsetal_2005,
author = {Adolf Stips and Hans Burchard and Karsten Bolding and
Hartmut Prandke and A. W\"uest},
title = {Measurement and simulation of viscous dissipation rates
in the wave affected surface layer},
journal = {Deep Sea Research II},
volume = 52,
pages = {1133-1155},
year = {2005},
doi = {doi:10.1016/j.dsr2.2005.01.012}
}
@article{stipsetal_2002,
author = {Adolf Stips and Hans Burchard and Karsten Bolding and
Walter Eifler},
title = {Modelling of convective turbulence with a two-equation
$k$-$\epsilon$ turbulence closure scheme},
journal = {Ocean Dynamics},
volume = 52,
pages = {153-168},
year = {2002},
doi = {doi:10.1007/s10236-002-0019-2}
}
@article{burchardetal_2002,
author = {Hans Burchard and Karsten Bolding and Tom P. Rippeth
and Adolf Stips and John H. Simpson
and J\"urgen S\"undermann},
title = {Microstructure of turbulence in the Northern North Sea:
comparative study of observations and model simulations},
journal = {Journal of Sea Research},
volume = 47,
pages = {223-238},
year = {2002},
doi = {doi:10.1016/S1385-1101(02)00126-0}
}
@article{burchardbolding_2000,
author = {Hans Burchard and Karsten Bolding},
title = {Comparitive analysis of four second-moment turbulence closure
for the oceanic mixed layer.},
journal = {Journal of Physical Oceanography},
year = {2000},
doi = {doi:10.1175/1520-0485(2001)031%3C1943:CAOFSM%3E2.0.CO;2}
}
@article{burchardetal_1998,
author = {Hans Burchard and Adolf Stips and Walter Eifler
and Karsten Bolding and Manuel Villarreal},
title = {Numerical simulation of dissipation measurements in
non-stratified and strongly stratified estuaries.},
journal = {Interactions between Estuaries, Coastal Seas and Shelf Sea},
pages = {1-18},
year = {2000}
}
@article{umlaufetal_2003,
author = {L. Umlauf and H. Burchard and K. Hutter},
title = {Extending the $k$-$\omega$ turbulence model towards oceanic
applications},
journal = {Ocean Modelling},
volume = {5},
pages = {195-218},
year = {2003},
doi = {doi:10.1016/S1463-5003(02)00039-2}
}
@article{umlaufburchard_2003,
author = {L. Umlauf and H. Burchard},
title = {A generic length-scale equation for geophysical turbulence models},
journal = {Journal of Marine Research},
volume = {61},
pages = {235--265},
year = {2003},
doi = {doi:10.1357/002224003322005087}
}
@article{umlaufburchard_2005,
author = {L. Umlauf and H. Burchard},
title = {Second-order turbulence closure models for gephysical boundary
layers. {A} review of recent work},
journal = {Continental Shelf Research},
volume = {25},
pages = {795--827},
year = {2005},
doi = {doi:10.1016/j.csr.2004.08.004}
}
@article{umlauf_2005,
author = {Lars Umlauf},
title = {Modelling the effects of horizontal and vertical shear in
stratified turbulent flows},
journal = {Deep Sea Research II},
volume = {52},
pages = {1181--1201},
year = {2005}
}
@article{arneborgetal_2007,
author = {Lars Arneborg and Volker Fiekas and Lars Umlauf and Hans Burchard},
title = {Gravity current dynamics and entrainment - {A} process study based
on observations in the {A}rkona {B}asin},
journal = {Journal of Physical Oceanography},
year = {2007},
volume = {37},
pages = {2094--2113},
doi = {doi:10.1175/JPO3110.1}
}
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