Contents

• Introduction
  • What is GOTM?
  • The idea behind GOTM
  • How to read the documentation
  • Acknowledgements
  
  
• The GOTM main program
  • Introduction
  • Fortran: Module Interface gotm -- the general framework (Source File: gotm.F90)
  
  
• The mean flow model
  • Introduction
  • Fortran: Module Interface Mean Flow (Source File: meanflow.F90)
  
  
• The turbulence model
  • Introduction
  • Second-order models
  • Algebraic Models
  • Explicit models for vertical shear and stratification
  • Parameter conversion for other models
  • Numerics
  • Fortran: Module Interface turbulence: its all in here ... (Source File: turbulence.F90)
  • Fortran: Module Interface kpp: the KPP-turbulence model (Source File: kpp.F90)
  
  
• Air-Sea interaction
  • Introduction
  • Fortran: Module Interface airsea -- atmospheric fluxes (Source File: airsea.F90)
  • Fortran: Module Interface airsea_variables (Source File: airsea_variables.F90)
  
  
• Working with observed data in GOTM
  • Fortran: Module Interface observations -- the 'real' world (Source File: observations.F90)
  
  
• Saving the results
  • Fortran: Module Interface output -- saving the results (Source File: output.F90)
  • Fortran: Module Interface asciiout -- saving the results in ASCII (Source File: asciiout.F90)
  • Fortran: Module Interface ncdfout -- saving the results in NetCDF (Source File: ncdfout.F90)
  
  
• Utilities
  • Introduction
  • Fortran: Module Interface util -- parameters and interfaces for utilities (Source File: util.F90)
  • Fortran: Module Interface mtridiagonal -- solving the system (Source File: tridiagonal.F90)
  • Fortran: Module Interface eqstate -- the equation of state (Source File: eqstate.F90)
  • Fortran: Module Interface time -- keep control of time (Source File: time.F90)
  
  
• Biogeochemical models
  • Mathematical formulation
  • Numerical aspects
  • Computational aspects
  
  
• Extra features
  • Fortran: Module Interface seagrass -- sea grass dynamics (Source File: seagrass.F90)
  
  
• Running GOTM in a GUI
  • Introduction
  • Software required
  
  
• GOTM scenarios
  • Idealised scenarios
  • Shelf sea scenarios
  • Open ocean scenarios
  • Lake scenarios
  • Biogeochemical scenarios
  
  
• Bibliography